Variant report

Variant	rs6555766
Chromosome Location	chr5:167140480-167140481
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10058151	1.00[ASN][1000 genomes]
rs11744500	1.00[ASN][1000 genomes]
rs55814675	1.00[ASN][1000 genomes]
rs56111454	1.00[ASN][1000 genomes]
rs62382816	1.00[ASN][1000 genomes]
rs6876801	1.00[ASN][1000 genomes]
rs72819682	1.00[ASN][1000 genomes]
rs72819683	1.00[ASN][1000 genomes]
rs72819696	1.00[ASN][1000 genomes]
rs72819701	1.00[ASN][1000 genomes]
rs72821806	1.00[ASN][1000 genomes]
rs72829393	1.00[ASN][1000 genomes]
rs72830072	1.00[ASN][1000 genomes]
rs72830076	1.00[ASN][1000 genomes]
rs72830077	1.00[ASN][1000 genomes]
rs72830079	1.00[ASN][1000 genomes]
rs72830082	1.00[ASN][1000 genomes]
rs72830084	1.00[ASN][1000 genomes]
rs72830085	1.00[ASN][1000 genomes]
rs72830087	1.00[ASN][1000 genomes]
rs72835627	1.00[ASN][1000 genomes]
rs7732135	1.00[MEX][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1032559	chr5:167070888-167210684	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1027805	chr5:167082800-167285008	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv5115	chr5:167101911-167147020	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167132800-167143400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:167137800-167143400	Weak transcription	HSMM	muscle
3	chr5:167137800-167146800	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr5:167138000-167141600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr5:167138600-167144600	Weak transcription	HMEC	breast
6	chr5:167138600-167144800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr5:167138800-167143000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:167140000-167140600	Enhancers	Osteobl	bone
9	chr5:167140400-167140600	Bivalent Enhancer	Fetal Brain Male	brain
10	chr5:167140400-167140800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:167140400-167140800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:167140400-167140800	ZNF genes & repeats	Fetal Kidney	kidney
13	chr5:167140400-167140800	Flanking Active TSS	Fetal Lung	lung
14	chr5:167140400-167140800	Enhancers	Left Ventricle	heart
15	chr5:167140400-167140800	Enhancers	Ovary	ovary
16	chr5:167140400-167140800	ZNF genes & repeats	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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