Variant report

Variant	rs72829393
Chromosome Location	chr5:166934630-166934631
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10058151	1.00[ASN][1000 genomes]
rs11744500	1.00[ASN][1000 genomes]
rs55814675	1.00[ASN][1000 genomes]
rs56111454	1.00[ASN][1000 genomes]
rs62382816	1.00[ASN][1000 genomes]
rs6555766	1.00[ASN][1000 genomes]
rs6876801	1.00[ASN][1000 genomes]
rs72819682	1.00[ASN][1000 genomes]
rs72819683	1.00[ASN][1000 genomes]
rs72819696	1.00[ASN][1000 genomes]
rs72819701	1.00[ASN][1000 genomes]
rs72821806	1.00[ASN][1000 genomes]
rs72830072	1.00[ASN][1000 genomes]
rs72830076	1.00[ASN][1000 genomes]
rs72830077	1.00[ASN][1000 genomes]
rs72830079	1.00[ASN][1000 genomes]
rs72830082	1.00[ASN][1000 genomes]
rs72830084	1.00[ASN][1000 genomes]
rs72830085	1.00[ASN][1000 genomes]
rs72830087	1.00[ASN][1000 genomes]
rs7732135	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932627	chr5:166744408-167290959	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:166929800-166943200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr5:166934600-166935600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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