Variant report

Variant	rs62387430
Chromosome Location	chr6:13804595-13804596
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13804130..13805948-chr6:13811469..13813056,2	MCF-7	breast:
2	chr6:13800004..13802605-chr6:13804451..13808287,4	MCF-7	breast:
3	chr6:13803762..13806190-chr6:13812213..13816489,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000050393	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs13204134	0.81[EUR][1000 genomes]
rs13219969	0.81[EUR][1000 genomes]
rs36030644	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13788000-13810600	Weak transcription	Fetal Heart	heart
2	chr6:13788000-13810800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:13788000-13812200	Weak transcription	Aorta	Aorta
4	chr6:13788000-13813200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr6:13788000-13813400	Weak transcription	Brain Germinal Matrix	brain
6	chr6:13788200-13807600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:13788400-13810600	Weak transcription	Colonic Mucosa	Colon
8	chr6:13788600-13810800	Weak transcription	Stomach Mucosa	stomach
9	chr6:13788800-13810600	Weak transcription	Small Intestine	intestine
10	chr6:13788800-13812200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:13788800-13813600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:13792600-13810800	Weak transcription	Spleen	Spleen
13	chr6:13793000-13813200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:13794800-13812200	Weak transcription	HMEC	breast
15	chr6:13795200-13808200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:13795200-13810800	Weak transcription	NHLF	lung
17	chr6:13795400-13812200	Weak transcription	HUVEC	blood vessel
18	chr6:13796000-13805600	Weak transcription	NH-A	brain
19	chr6:13796000-13809800	Strong transcription	Dnd41	blood
20	chr6:13796000-13811000	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr6:13796400-13807600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr6:13796800-13809800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:13797000-13807000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr6:13797000-13807400	Strong transcription	Duodenum Mucosa	Duodenum
25	chr6:13797000-13807600	Strong transcription	Fetal Thymus	thymus
26	chr6:13797000-13809800	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr6:13797200-13806400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:13797600-13807400	Strong transcription	Fetal Stomach	stomach
29	chr6:13797600-13808200	Weak transcription	HSMM	muscle
30	chr6:13797600-13810600	Strong transcription	Fetal Intestine Small	intestine
31	chr6:13797800-13807400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr6:13798400-13807400	Strong transcription	Fetal Intestine Large	intestine
33	chr6:13798600-13807600	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr6:13799000-13807600	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr6:13799000-13807600	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:13799400-13806600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr6:13799400-13807200	Strong transcription	Placenta	Placenta
38	chr6:13799800-13811400	Weak transcription	Ovary	ovary
39	chr6:13799800-13812000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:13800600-13807800	Strong transcription	K562	blood
41	chr6:13800600-13813600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr6:13801200-13805400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:13801400-13812200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr6:13801400-13813200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr6:13801600-13805200	Weak transcription	Brain Angular Gyrus	brain
46	chr6:13801600-13805600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr6:13801600-13811000	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr6:13801600-13813200	Weak transcription	A549	lung
49	chr6:13801800-13805800	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr6:13801800-13812600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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