Variant report

Variant	rs36030644
Chromosome Location	chr6:13779146-13779147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1204144	0.89[ASN][1000 genomes]
rs13204134	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13207837	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13214714	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219011	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219969	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35048447	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36030296	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734671	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757251	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62387427	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62387430	0.81[EUR][1000 genomes]
rs6924902	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940337	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941754	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1030774	chr6:13736025-13783733	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13766800-13802400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:13768200-13787400	Weak transcription	Fetal Lung	lung
3	chr6:13768800-13790400	Weak transcription	Lung	lung
4	chr6:13770000-13787200	Weak transcription	Fetal Stomach	stomach
5	chr6:13773200-13790200	Weak transcription	Spleen	Spleen
6	chr6:13774000-13786200	Weak transcription	Fetal Intestine Small	intestine
7	chr6:13774000-13788200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:13777200-13787200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:13777200-13787400	Weak transcription	Dnd41	blood
10	chr6:13778800-13788600	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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