Variant report

Variant	rs13219969
Chromosome Location	chr6:13782468-13782469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13759487..13762830-chr6:13781889..13785114,3	K562	blood:
2	chr6:13708990..13711800-chr6:13781741..13784395,2	K562	blood:
3	chr6:13781829..13783763-chr6:13794136..13796516,2	K562	blood:
4	chr6:13774489..13777263-chr6:13781382..13783354,2	K562	blood:

Variant related genes	Relation type
ENSG00000010017	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1204144	0.89[ASN][1000 genomes]
rs13204134	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13207837	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13214714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219011	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35048447	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36030296	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36030644	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62387427	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62387430	0.81[EUR][1000 genomes]
rs6924902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941754	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1030774	chr6:13736025-13783733	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13766800-13802400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:13768200-13787400	Weak transcription	Fetal Lung	lung
3	chr6:13768800-13790400	Weak transcription	Lung	lung
4	chr6:13770000-13787200	Weak transcription	Fetal Stomach	stomach
5	chr6:13773200-13790200	Weak transcription	Spleen	Spleen
6	chr6:13774000-13786200	Weak transcription	Fetal Intestine Small	intestine
7	chr6:13774000-13788200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:13777200-13787200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:13777200-13787400	Weak transcription	Dnd41	blood
10	chr6:13778800-13788600	Weak transcription	Placenta	Placenta
11	chr6:13779200-13783600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:13780600-13790000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:13780600-13790000	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:13780800-13789200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:13780800-13797800	Weak transcription	Thymus	Thymus
16	chr6:13781000-13801200	Weak transcription	Psoas Muscle	Psoas
17	chr6:13781000-13802000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr6:13781200-13790400	Weak transcription	Fetal Muscle Trunk	muscle
19	chr6:13781400-13791800	Weak transcription	HSMM	muscle
20	chr6:13781600-13787600	Weak transcription	Aorta	Aorta
21	chr6:13781600-13788400	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr6:13781600-13789200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr6:13782000-13787400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr6:13782000-13790000	Weak transcription	Duodenum Mucosa	Duodenum

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