Variant report

Variant	rs62387427
Chromosome Location	chr6:13784354-13784355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:13759487..13762830-chr6:13781889..13785114,3	K562	blood:
2	chr6:13708990..13711800-chr6:13781741..13784395,2	K562	blood:
3	chr6:13772110..13774350-chr6:13784237..13786715,2	K562	blood:

Variant related genes	Relation type
ENSG00000010017	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1204144	0.89[ASN][1000 genomes]
rs13204134	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13207837	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13214714	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219011	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219969	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35048447	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36030296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36030644	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734671	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757251	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940337	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941754	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13766800-13802400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:13768200-13787400	Weak transcription	Fetal Lung	lung
3	chr6:13768800-13790400	Weak transcription	Lung	lung
4	chr6:13770000-13787200	Weak transcription	Fetal Stomach	stomach
5	chr6:13773200-13790200	Weak transcription	Spleen	Spleen
6	chr6:13774000-13786200	Weak transcription	Fetal Intestine Small	intestine
7	chr6:13774000-13788200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:13777200-13787200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:13777200-13787400	Weak transcription	Dnd41	blood
10	chr6:13778800-13788600	Weak transcription	Placenta	Placenta
11	chr6:13780600-13790000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr6:13780600-13790000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:13780800-13789200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:13780800-13797800	Weak transcription	Thymus	Thymus
15	chr6:13781000-13801200	Weak transcription	Psoas Muscle	Psoas
16	chr6:13781000-13802000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr6:13781200-13790400	Weak transcription	Fetal Muscle Trunk	muscle
18	chr6:13781400-13791800	Weak transcription	HSMM	muscle
19	chr6:13781600-13787600	Weak transcription	Aorta	Aorta
20	chr6:13781600-13788400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr6:13781600-13789200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr6:13782000-13787400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr6:13782000-13790000	Weak transcription	Duodenum Mucosa	Duodenum
24	chr6:13782600-13787000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:13782600-13789800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr6:13782800-13790000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:13783600-13784400	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr6:13783600-13787600	Weak transcription	Ovary	ovary
29	chr6:13783800-13787400	Weak transcription	HSMMtube	muscle
30	chr6:13783800-13790200	Weak transcription	Pancreas	Pancrea
31	chr6:13784000-13786200	Weak transcription	Fetal Muscle Leg	muscle
32	chr6:13784000-13787400	Weak transcription	Primary B cells from cord blood	blood
33	chr6:13784000-13787400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr6:13784000-13787400	Weak transcription	Fetal Brain Female	brain
35	chr6:13784000-13788400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr6:13784200-13787200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr6:13784200-13787400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr6:13784200-13787600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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