Variant report

Variant	rs13219011
Chromosome Location	chr6:13771443-13771444
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1204144	0.89[ASN][1000 genomes]
rs13204134	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13207837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13214714	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219969	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35048447	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36030296	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36030644	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3734671	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757251	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62387427	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924902	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940337	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941754	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv1030774	chr6:13736025-13783733	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13766800-13772800	Weak transcription	Spleen	Spleen
2	chr6:13766800-13802400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:13768200-13771600	Weak transcription	NHLF	lung
4	chr6:13768200-13787400	Weak transcription	Fetal Lung	lung
5	chr6:13768800-13790400	Weak transcription	Lung	lung
6	chr6:13769800-13775000	Weak transcription	K562	blood
7	chr6:13770000-13773800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr6:13770000-13775800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr6:13770000-13787200	Weak transcription	Fetal Stomach	stomach
10	chr6:13770200-13775400	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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