Variant report

Variant	rs3734671
Chromosome Location	chr6:13787792-13787793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:13574452..13576809-chr6:13785260..13788527,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CCDC90A-8	chr6:13786977-13790645	NONHSAT107814

Variant related genes	Relation type
ENSG00000124523	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1204144	0.89[ASN][1000 genomes]
rs13204134	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13207837	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13214714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219011	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13219969	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35048447	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36030296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36030644	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3757251	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62387427	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6924902	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940337	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941754	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532021	chr6:13232627-13805381	Active TSS Genic enhancers Strong transcription Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:13766800-13802400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:13768800-13790400	Weak transcription	Lung	lung
3	chr6:13773200-13790200	Weak transcription	Spleen	Spleen
4	chr6:13774000-13788200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:13778800-13788600	Weak transcription	Placenta	Placenta
6	chr6:13780600-13790000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr6:13780600-13790000	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:13780800-13789200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:13780800-13797800	Weak transcription	Thymus	Thymus
10	chr6:13781000-13801200	Weak transcription	Psoas Muscle	Psoas
11	chr6:13781000-13802000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr6:13781200-13790400	Weak transcription	Fetal Muscle Trunk	muscle
13	chr6:13781400-13791800	Weak transcription	HSMM	muscle
14	chr6:13781600-13788400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:13781600-13789200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr6:13782000-13790000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:13782600-13789800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:13782800-13790000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr6:13783800-13790200	Weak transcription	Pancreas	Pancrea
20	chr6:13784000-13788400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr6:13784600-13792000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:13784600-13794600	Weak transcription	A549	lung
23	chr6:13784800-13788600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:13785000-13790000	Weak transcription	K562	blood
25	chr6:13785000-13800800	Weak transcription	Brain Angular Gyrus	brain
26	chr6:13785200-13788800	Weak transcription	Fetal Thymus	thymus
27	chr6:13785200-13801600	Weak transcription	Gastric	stomach
28	chr6:13785400-13800600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr6:13786000-13789200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr6:13786000-13789800	Weak transcription	Primary T cells from cord blood	blood
31	chr6:13786000-13789800	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr6:13786000-13789800	Weak transcription	HepG2	liver
33	chr6:13786000-13790000	Weak transcription	Liver	Liver
34	chr6:13786000-13801200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr6:13786400-13790000	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr6:13786400-13790000	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr6:13786400-13794800	Weak transcription	NHLF	lung
38	chr6:13786600-13787800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr6:13786600-13790200	Weak transcription	Fetal Intestine Small	intestine
40	chr6:13786800-13790200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr6:13787000-13787800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr6:13787000-13790000	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr6:13787000-13794400	Weak transcription	HMEC	breast
44	chr6:13787200-13787800	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr6:13787200-13787800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr6:13787200-13787800	Active TSS	Stomach Smooth Muscle	stomach
47	chr6:13787200-13788000	Enhancers	ES-I3 Cell Line	embryonic stem cell
48	chr6:13787200-13788000	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr6:13787200-13788000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr6:13787200-13788000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain

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