Variant report

Variant	rs62400444
Chromosome Location	chr6:24328095-24328096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs35830445	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62400443	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62400448	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62400452	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921810	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7765678	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467116	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv511339	chr6:24323858-24330240	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv511857	chr6:24325054-24328406	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3473864	chr6:24325173-24329471	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv601159	chr6:24325627-24329730	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24324200-24329400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:24324400-24332000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:24324600-24329200	Weak transcription	NHEK	skin
4	chr6:24324600-24330000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr6:24324600-24332000	Weak transcription	HMEC	breast
6	chr6:24324600-24332200	Weak transcription	HSMMtube	muscle
7	chr6:24324800-24329000	Weak transcription	Fetal Kidney	kidney
8	chr6:24325000-24329000	Weak transcription	NH-A	brain
9	chr6:24325000-24329400	Enhancers	HepG2	liver
10	chr6:24325600-24328200	Weak transcription	A549	lung
11	chr6:24327400-24339200	Weak transcription	Pancreas	Pancrea
12	chr6:24327800-24328200	Weak transcription	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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