Variant report

Variant	rs7765678
Chromosome Location	chr6:24330544-24330545
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs35830445	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62400443	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62400444	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62400448	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62400452	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6921810	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9467116	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:24324400-24332000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr6:24324600-24332000	Weak transcription	HMEC	breast
3	chr6:24324600-24332200	Weak transcription	HSMMtube	muscle
4	chr6:24327400-24339200	Weak transcription	Pancreas	Pancrea
5	chr6:24329000-24331000	Flanking Active TSS	A549	lung
6	chr6:24329000-24331200	Enhancers	Pancreatic Islets	Pancreatic Islet
7	chr6:24329200-24330800	Enhancers	NHEK	skin
8	chr6:24329600-24332200	Weak transcription	NH-A	brain
9	chr6:24329800-24330600	Weak transcription	Fetal Kidney	kidney
10	chr6:24330000-24330800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:24330000-24331000	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr6:24330000-24332200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr6:24330200-24331200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:24330200-24338400	Weak transcription	Fetal Intestine Large	intestine
15	chr6:24330400-24332400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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