Variant report

Variant	rs62411984
Chromosome Location	chr6:73360434-73360435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73351149..73353791-chr6:73359149..73361413,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10484913	0.85[EUR][1000 genomes]
rs10485213	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10943043	1.00[ASN][1000 genomes]
rs10943048	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10943051	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10943055	0.87[EUR][1000 genomes]
rs10943057	0.80[EUR][1000 genomes]
rs11758568	1.00[ASN][1000 genomes]
rs11759937	0.88[EUR][1000 genomes]
rs12189974	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12190091	1.00[ASN][1000 genomes]
rs12191216	0.82[EUR][1000 genomes]
rs12197962	0.83[EUR][1000 genomes]
rs12200468	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12204989	0.85[EUR][1000 genomes]
rs12205254	1.00[ASN][1000 genomes]
rs12205834	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12208907	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12212562	1.00[ASN][1000 genomes]
rs12214894	1.00[ASN][1000 genomes]
rs12214895	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12215865	0.83[EUR][1000 genomes]
rs12374630	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs17692715	1.00[ASN][1000 genomes]
rs17692874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17692898	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17729195	0.87[EUR][1000 genomes]
rs17749408	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17749420	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17796704	0.82[EUR][1000 genomes]
rs34821312	1.00[ASN][1000 genomes]
rs55633371	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55826353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56086224	1.00[ASN][1000 genomes]
rs56254477	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56316829	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62411975	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62411990	0.82[EUR][1000 genomes]
rs6453592	1.00[ASN][1000 genomes]
rs6453593	1.00[ASN][1000 genomes]
rs6453594	1.00[ASN][1000 genomes]
rs6922524	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922932	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935174	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs719830	0.81[EUR][1000 genomes]
rs72935423	0.88[EUR][1000 genomes]
rs7768673	1.00[ASN][1000 genomes]
rs7772197	0.80[EUR][1000 genomes]
rs7776215	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73336200-73362800	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73355200-73362200	Weak transcription	Psoas Muscle	Psoas
3	chr6:73357400-73361000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:73358400-73361000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:73358600-73360600	Enhancers	Fetal Heart	heart
6	chr6:73358600-73360800	Enhancers	Skeletal Muscle Female	skeletal muscle
7	chr6:73358600-73360800	Enhancers	HMEC	breast
8	chr6:73358600-73362600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:73358800-73360800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:73358800-73360800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:73358800-73362200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:73358800-73362600	Enhancers	HSMM	muscle
13	chr6:73358800-73362600	Enhancers	HSMMtube	muscle
14	chr6:73359000-73360800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr6:73359000-73362200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:73359600-73360600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:73359600-73360600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr6:73359600-73362000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr6:73359600-73362800	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr6:73359600-73373000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr6:73359600-73398800	Weak transcription	Primary B cells from peripheral blood	blood
22	chr6:73359800-73360600	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr6:73359800-73360800	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr6:73359800-73386800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr6:73360000-73360600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr6:73360000-73360800	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr6:73360000-73360800	Flanking Active TSS	GM12878-XiMat	blood
28	chr6:73360200-73360600	Flanking Active TSS	Osteobl	bone
29	chr6:73360200-73360800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
30	chr6:73360200-73360800	Flanking Active TSS	NHEK	skin
31	chr6:73360400-73360600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:73360400-73360600	Enhancers	NHLF	lung
33	chr6:73360400-73360800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:73360400-73360800	Flanking Active TSS	Aorta	Aorta
35	chr6:73360400-73361000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr6:73360400-73362200	Enhancers	NH-A	brain
37	chr6:73360400-73372600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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