Variant report

Variant	rs72935423
Chromosome Location	chr6:73391743-73391744
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10484913	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10485213	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943048	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943050	1.00[ASN][1000 genomes]
rs10943051	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943055	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943057	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10943058	1.00[ASN][1000 genomes]
rs11759937	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12189974	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191039	1.00[ASN][1000 genomes]
rs12191216	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12191848	1.00[ASN][1000 genomes]
rs12192751	1.00[ASN][1000 genomes]
rs12194741	1.00[ASN][1000 genomes]
rs12195259	1.00[ASN][1000 genomes]
rs12197962	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12199549	1.00[ASN][1000 genomes]
rs12200468	0.88[EUR][1000 genomes]
rs12200908	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12201380	1.00[ASN][1000 genomes]
rs12204139	1.00[ASN][1000 genomes]
rs12204989	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12205374	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12205834	0.87[EUR][1000 genomes]
rs12208907	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12210850	1.00[ASN][1000 genomes]
rs12211580	1.00[ASN][1000 genomes]
rs12212268	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs12212419	1.00[ASN][1000 genomes]
rs12212818	1.00[ASN][1000 genomes]
rs12214895	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12215865	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12374630	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12374631	1.00[ASN][1000 genomes]
rs17692874	0.88[EUR][1000 genomes]
rs17692898	0.88[EUR][1000 genomes]
rs17729195	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17749408	0.88[EUR][1000 genomes]
rs17749420	0.88[EUR][1000 genomes]
rs17796704	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1928153	1.00[ASN][1000 genomes]
rs55633371	0.87[EUR][1000 genomes]
rs55826353	0.88[EUR][1000 genomes]
rs56254477	0.87[EUR][1000 genomes]
rs56316829	0.88[EUR][1000 genomes]
rs62411975	0.85[EUR][1000 genomes]
rs62411984	0.88[EUR][1000 genomes]
rs62411986	1.00[ASN][1000 genomes]
rs62411990	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6922524	0.87[EUR][1000 genomes]
rs6922932	0.87[EUR][1000 genomes]
rs6931918	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6935174	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs719830	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7748594	1.00[ASN][1000 genomes]
rs7772197	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7776215	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1794408	chr6:73363298-73419987	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv463152	chr6:73369739-73406890	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv603692	chr6:73369739-73406890	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73359600-73398800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:73377200-73399000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:73379400-73412600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:73381200-73403600	Weak transcription	Primary T cells from cord blood	blood
5	chr6:73382800-73414200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:73383600-73412200	Weak transcription	Primary B cells from cord blood	blood
7	chr6:73384800-73399800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:73385400-73412400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:73386200-73399000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:73387200-73392600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:73387200-73399000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:73390200-73392000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:73391400-73392200	Enhancers	GM12878-XiMat	blood
14	chr6:73391400-73392400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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