Variant report

Variant	rs62416396
Chromosome Location	chr6:69590344-69590345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs62416366	1.00[EUR][1000 genomes]
rs62416393	1.00[EUR][1000 genomes]
rs62416404	1.00[EUR][1000 genomes]
rs62416407	1.00[EUR][1000 genomes]
rs62416450	1.00[EUR][1000 genomes]
rs62416451	0.83[EUR][1000 genomes]
rs62418266	1.00[EUR][1000 genomes]
rs62418269	1.00[EUR][1000 genomes]
rs62418271	1.00[EUR][1000 genomes]
rs62418571	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv886133	chr6:69549897-69610281	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv886134	chr6:69571053-69605682	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886135	chr6:69571053-69606748	Weak transcription Strong transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv528106	chr6:69581991-69610281	Enhancers Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv470831	chr6:69581991-69654650	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69586600-69591200	Weak transcription	Brain Angular Gyrus	brain
2	chr6:69589400-69590600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:69589600-69590400	Enhancers	Brain Substantia Nigra	brain
4	chr6:69589600-69590600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:69589600-69590800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:69589800-69591800	Enhancers	Brain Cingulate Gyrus	brain
7	chr6:69589800-69592800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:69590000-69590600	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr6:69590000-69590600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:69590000-69591600	Enhancers	Brain Anterior Caudate	brain
11	chr6:69590200-69591200	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:69590200-69591200	Weak transcription	Brain Inferior Temporal Lobe	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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