Variant report

Variant	rs62416451
Chromosome Location	chr6:69646626-69646627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs62416366	0.83[EUR][1000 genomes]
rs62416393	0.83[EUR][1000 genomes]
rs62416396	0.83[EUR][1000 genomes]
rs62416404	0.83[EUR][1000 genomes]
rs62416407	0.83[EUR][1000 genomes]
rs62416450	0.83[EUR][1000 genomes]
rs62418266	0.83[EUR][1000 genomes]
rs62418269	0.83[EUR][1000 genomes]
rs62418271	0.83[EUR][1000 genomes]
rs62418571	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv470831	chr6:69581991-69654650	Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv886136	chr6:69598297-69654650	Weak transcription Strong transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69643200-69646800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr6:69644000-69653600	Weak transcription	Brain Substantia Nigra	brain
3	chr6:69644000-69653800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:69644600-69665800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr6:69645200-69653600	Weak transcription	Brain Hippocampus Middle	brain
6	chr6:69645200-69661200	Weak transcription	Left Ventricle	heart
7	chr6:69645600-69679000	Weak transcription	Fetal Brain Female	brain
8	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
9	chr6:69646200-69677200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:69646600-69647400	Weak transcription	Aorta	Aorta

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links