Variant report

Variant	rs62418571
Chromosome Location	chr6:69546523-69546524
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs62416366	1.00[EUR][1000 genomes]
rs62416393	1.00[EUR][1000 genomes]
rs62416396	1.00[EUR][1000 genomes]
rs62416404	1.00[EUR][1000 genomes]
rs62416407	1.00[EUR][1000 genomes]
rs62416450	1.00[EUR][1000 genomes]
rs62416451	0.83[EUR][1000 genomes]
rs62418266	1.00[EUR][1000 genomes]
rs62418269	1.00[EUR][1000 genomes]
rs62418271	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886132	chr6:69487204-69610281	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69532800-69548000	Weak transcription	Fetal Lung	lung
2	chr6:69536800-69547800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:69545800-69546600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr6:69546400-69546600	Enhancers	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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