Variant report

Variant	rs62426122
Chromosome Location	chr6:149748585-149748586
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149401238..149401990-chr6:149748324..149749629,5	MCF-7	breast:
2	chr6:149744819..149747181-chr6:149748180..149751163,2	MCF-7	breast:
3	chr6:149748430..149751387-chr6:149751741..149754089,3	MCF-7	breast:
4	chr6:149638351..149641682-chr6:149748296..149751639,3	MCF-7	breast:
5	chr6:149407753..149410844-chr6:149747576..149751159,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000055208	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11155649	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11155650	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11155651	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11155652	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12196348	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12196455	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12196750	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12207047	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12207261	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12209364	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2143075	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2341774	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2341775	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs55836833	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7896	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9322179	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9390678	0.84[ASN][1000 genomes]
rs9485389	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9485390	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9498348	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv517606	chr6:149744632-149755695	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv470866	chr6:149744632-149806552	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv5533	chr6:149748047-149793072	Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149709600-149750200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:149745400-149748600	Weak transcription	HSMMtube	muscle
3	chr6:149745400-149750400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:149745600-149749000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr6:149745600-149750200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:149745600-149752800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:149745600-149752800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:149745600-149752800	Weak transcription	HSMM	muscle
9	chr6:149745600-149753000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr6:149745600-149753000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr6:149745600-149753000	Weak transcription	Fetal Muscle Leg	muscle
12	chr6:149746800-149753000	Weak transcription	Placenta	Placenta
13	chr6:149746800-149762000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr6:149747800-149748800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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