Variant report

Variant	rs2341774
Chromosome Location	chr6:149746150-149746151
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149379361..149382289-chr6:149745014..149748004,4	MCF-7	breast:
2	chr6:149745176..149748304-chr6:149748732..149751749,4	MCF-7	breast:
3	chr6:149740980..149743677-chr6:149744800..149747765,2	K562	blood:
4	chr6:149744819..149747181-chr6:149748180..149751163,2	MCF-7	breast:
5	chr6:149352125..149354322-chr6:149744702..149746498,2	MCF-7	breast:
6	chr6:149348466..149350718-chr6:149745093..149747617,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000236591	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10155766	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10872636	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11155640	0.82[EUR][1000 genomes]
rs11155642	0.83[EUR][1000 genomes]
rs11155645	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11155647	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11155649	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11155650	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11155651	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11155652	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12154153	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12191079	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12192159	0.80[AMR][1000 genomes]
rs12196348	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12196455	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12196656	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12196750	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12197598	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12204461	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12204793	0.83[EUR][1000 genomes]
rs12207047	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12207261	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12209364	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12211357	0.83[EUR][1000 genomes]
rs12211570	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17506789	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1980774	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2143075	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2341775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34097428	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4493763	0.84[EUR][1000 genomes]
rs55826712	0.84[EUR][1000 genomes]
rs55836833	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs56924465	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59820585	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60153446	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61259243	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62426068	0.81[EUR][1000 genomes]
rs62426069	0.82[EUR][1000 genomes]
rs62426088	0.83[EUR][1000 genomes]
rs62426092	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62426115	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62426122	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs66672129	0.83[EUR][1000 genomes]
rs68080376	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6920383	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7349921	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs763590	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7896	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9285520	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9322179	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9485389	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9485390	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9485392	0.80[AMR][1000 genomes]
rs9498322	0.83[EUR][1000 genomes]
rs9498323	0.83[EUR][1000 genomes]
rs9498324	0.83[EUR][1000 genomes]
rs9498325	0.83[EUR][1000 genomes]
rs9498328	0.85[EUR][1000 genomes]
rs9498329	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9498330	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9498332	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9498333	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9498334	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9498335	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9498336	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9498337	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9498338	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9498341	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9498342	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9498344	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9498348	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9498356	0.80[AMR][1000 genomes]
rs997682	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv517606	chr6:149744632-149755695	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv470866	chr6:149744632-149806552	Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149709600-149750200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:149744000-149746800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:149744600-149746400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr6:149745200-149746800	Enhancers	Placenta	Placenta
5	chr6:149745400-149746200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:149745400-149746200	Weak transcription	Lung	lung
7	chr6:149745400-149746800	Weak transcription	Fetal Heart	heart
8	chr6:149745400-149748600	Weak transcription	HSMMtube	muscle
9	chr6:149745400-149750400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr6:149745600-149746600	Enhancers	Brain Cingulate Gyrus	brain
11	chr6:149745600-149746600	Enhancers	Brain Hippocampus Middle	brain
12	chr6:149745600-149747000	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr6:149745600-149749000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:149745600-149750200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr6:149745600-149752800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr6:149745600-149752800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:149745600-149752800	Weak transcription	HSMM	muscle
18	chr6:149745600-149753000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr6:149745600-149753000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr6:149745600-149753000	Weak transcription	Fetal Muscle Leg	muscle
21	chr6:149746000-149746200	Enhancers	Right Ventricle	heart

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