Variant report

Variant	rs62427279
Chromosome Location	chr6:79725229-79725230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:79715703..79719532-chr6:79722802..79725708,3	K562	blood:
2	chr6:79720377..79723032-chr6:79723737..79726706,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17786110	1.00[AFR][1000 genomes]
rs17786528	1.00[AFR][1000 genomes]
rs72891829	1.00[AFR][1000 genomes]
rs72893703	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015352	chr6:79521820-79757024	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv830705	chr6:79659297-79829530	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv604051	chr6:79691175-79728328	Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv518477	chr6:79700159-79850427	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:79687000-79736000	Strong transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:79687000-79736200	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr6:79687200-79735400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:79687200-79741600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:79687600-79775000	Strong transcription	Dnd41	blood
6	chr6:79687800-79736000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:79688400-79742800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr6:79688400-79744400	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr6:79689200-79738800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:79704000-79737400	Weak transcription	Right Ventricle	heart
11	chr6:79704600-79730400	Weak transcription	Fetal Intestine Small	intestine
12	chr6:79704600-79786600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:79705000-79738600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:79705200-79732800	Weak transcription	Lung	lung
15	chr6:79706600-79740000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr6:79706600-79747800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr6:79707400-79731800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:79707400-79737400	Weak transcription	Spleen	Spleen
19	chr6:79707400-79740000	Weak transcription	Small Intestine	intestine
20	chr6:79707400-79755800	Weak transcription	Pancreas	Pancrea
21	chr6:79707400-79786000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr6:79707400-79786600	Weak transcription	Esophagus	oesophagus
23	chr6:79707800-79745200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr6:79708200-79732800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:79708200-79741800	Weak transcription	A549	lung
26	chr6:79708800-79769600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:79709000-79733600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr6:79709000-79737400	Weak transcription	Ovary	ovary
29	chr6:79709200-79725600	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr6:79709400-79726600	Weak transcription	Fetal Brain Male	brain
31	chr6:79710800-79774600	Weak transcription	Psoas Muscle	Psoas
32	chr6:79711800-79732200	Weak transcription	NHEK	skin
33	chr6:79711800-79735000	Weak transcription	Colonic Mucosa	Colon
34	chr6:79712200-79741600	Weak transcription	HSMMtube	muscle
35	chr6:79712400-79732000	Weak transcription	HMEC	breast
36	chr6:79712400-79735400	Weak transcription	Brain Substantia Nigra	brain
37	chr6:79713600-79747000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr6:79714000-79725400	Weak transcription	Left Ventricle	heart
39	chr6:79714000-79730800	Weak transcription	Fetal Muscle Leg	muscle
40	chr6:79714000-79732400	Weak transcription	Thymus	Thymus
41	chr6:79714200-79725400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr6:79714400-79725800	Weak transcription	HepG2	liver
43	chr6:79714600-79725600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr6:79714600-79735800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr6:79714600-79747000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr6:79715600-79725800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:79715800-79725400	Weak transcription	NHLF	lung
48	chr6:79715800-79732800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr6:79715800-79735400	Weak transcription	Brain Angular Gyrus	brain
50	chr6:79716000-79730400	Weak transcription	Brain Inferior Temporal Lobe	brain

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