Variant report

Variant	rs62427535
Chromosome Location	chr6:163362207-163362208
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs11964226	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11964705	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11965443	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11967132	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11967135	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11967166	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11970125	0.80[EUR][1000 genomes]
rs2221975	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4389743	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4543347	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4709661	0.88[EUR][1000 genomes]
rs4709663	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4709664	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55723249	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58489634	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59534178	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59788701	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59803348	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60694818	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61035272	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61606501	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62427533	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62429277	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62429278	0.81[ASN][1000 genomes]
rs6900268	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6909531	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6915180	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6918305	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6918472	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6918850	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6919184	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6932216	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6933877	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6934653	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71008123	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73607817	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73783943	0.83[ASN][1000 genomes]
rs7742312	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7742535	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7752967	0.90[EUR][1000 genomes]
rs7770196	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7771379	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9456824	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9458681	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9458682	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9458684	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9458685	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9458686	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9458687	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9458688	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9458689	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9458690	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9458693	0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9458694	0.83[ASN][1000 genomes]
rs9458695	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9458697	0.85[EUR][1000 genomes]
rs967021	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9784845	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917926	chr6:162646457-163609259	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1030546	chr6:162748287-163475085	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv538518	chr6:162748287-163475085	Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv605159	chr6:162800156-163479507	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv481962	chr6:163033886-163401583	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1032968	chr6:163095774-163391548	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv529089	chr6:163129464-163516451	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv1024624	chr6:163266701-163410702	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv1030116	chr6:163273707-163525678	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv1020900	chr6:163302262-163517812	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv886916	chr6:163312845-163410185	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv916587	chr6:163337791-163606120	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv970709	chr6:163342264-163409316	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
17	esv2762627	chr6:163343020-163370028	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
18	nsv464126	chr6:163361196-163432364	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv605186	chr6:163361196-163432364	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163361200-163362400	Active TSS	Brain Angular Gyrus	brain
2	chr6:163361400-163362400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr6:163361400-163362400	Enhancers	Fetal Brain Male	brain
4	chr6:163361400-163362400	Enhancers	Fetal Lung	lung
5	chr6:163361400-163362600	Active TSS	Brain Anterior Caudate	brain
6	chr6:163361400-163362600	Enhancers	Fetal Heart	heart
7	chr6:163361600-163362400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:163361600-163362600	Enhancers	Left Ventricle	heart
9	chr6:163361600-163364400	Enhancers	Fetal Intestine Small	intestine
10	chr6:163361800-163362400	Active TSS	Brain Hippocampus Middle	brain
11	chr6:163362000-163362600	Enhancers	Brain Cingulate Gyrus	brain
12	chr6:163362000-163362600	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr6:163362000-163362800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:163362000-163363400	Enhancers	Fetal Intestine Large	intestine
15	chr6:163362200-163362600	Enhancers	H1 Cell Line	embryonic stem cell
16	chr6:163362200-163362600	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr6:163362200-163362600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
18	chr6:163362200-163362600	Flanking Active TSS	Brain Substantia Nigra	brain
19	chr6:163362200-163362600	Flanking Active TSS	NHDF-Ad	bronchial
20	chr6:163362200-163363000	Enhancers	Brain Germinal Matrix	brain

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