Variant report

Variant	rs62429278
Chromosome Location	chr6:163394322-163394323
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs11964226	0.94[ASN][1000 genomes]
rs11964705	0.93[ASN][1000 genomes]
rs11965443	0.94[ASN][1000 genomes]
rs11967132	0.94[ASN][1000 genomes]
rs11967135	0.94[ASN][1000 genomes]
rs2221975	0.82[ASN][1000 genomes]
rs4389743	0.94[ASN][1000 genomes]
rs4543347	0.94[ASN][1000 genomes]
rs4709661	0.86[ASN][1000 genomes]
rs4709663	0.94[ASN][1000 genomes]
rs4709664	0.94[ASN][1000 genomes]
rs55723249	0.97[ASN][1000 genomes]
rs58489634	0.94[ASN][1000 genomes]
rs59534178	0.94[ASN][1000 genomes]
rs59788701	0.94[ASN][1000 genomes]
rs59803348	0.94[ASN][1000 genomes]
rs60694818	0.94[ASN][1000 genomes]
rs61035272	0.82[ASN][1000 genomes]
rs61606501	0.94[ASN][1000 genomes]
rs62427533	0.83[ASN][1000 genomes]
rs62427535	0.81[ASN][1000 genomes]
rs62429277	0.93[ASN][1000 genomes]
rs6900268	0.96[ASN][1000 genomes]
rs6909531	0.96[ASN][1000 genomes]
rs6915180	0.96[ASN][1000 genomes]
rs6918305	0.94[ASN][1000 genomes]
rs6918472	0.94[ASN][1000 genomes]
rs6918850	0.94[ASN][1000 genomes]
rs6919184	0.94[ASN][1000 genomes]
rs6932216	0.96[ASN][1000 genomes]
rs6933877	0.94[ASN][1000 genomes]
rs6934653	0.94[ASN][1000 genomes]
rs71008123	0.93[ASN][1000 genomes]
rs73607817	0.94[ASN][1000 genomes]
rs73783943	0.98[ASN][1000 genomes]
rs7742312	0.94[ASN][1000 genomes]
rs7742535	0.94[ASN][1000 genomes]
rs7752967	0.91[ASN][1000 genomes]
rs7770196	0.94[ASN][1000 genomes]
rs7771379	0.95[ASN][1000 genomes]
rs9456824	0.94[ASN][1000 genomes]
rs9458681	0.94[ASN][1000 genomes]
rs9458682	0.94[ASN][1000 genomes]
rs9458684	0.94[ASN][1000 genomes]
rs9458685	0.94[ASN][1000 genomes]
rs9458686	0.94[ASN][1000 genomes]
rs9458687	0.94[ASN][1000 genomes]
rs9458688	0.94[ASN][1000 genomes]
rs9458689	0.96[ASN][1000 genomes]
rs9458690	0.96[ASN][1000 genomes]
rs9458693	0.92[ASN][1000 genomes]
rs9458694	0.96[ASN][1000 genomes]
rs9458695	0.96[ASN][1000 genomes]
rs9458697	0.93[ASN][1000 genomes]
rs967021	0.93[ASN][1000 genomes]
rs9784845	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917926	chr6:162646457-163609259	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1030546	chr6:162748287-163475085	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv538518	chr6:162748287-163475085	Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv605159	chr6:162800156-163479507	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv481962	chr6:163033886-163401583	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv529089	chr6:163129464-163516451	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv1026490	chr6:163133433-163705708	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv869286	chr6:163146342-163697445	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	nsv1024624	chr6:163266701-163410702	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	nsv1030116	chr6:163273707-163525678	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv1020900	chr6:163302262-163517812	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv886916	chr6:163312845-163410185	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv916587	chr6:163337791-163606120	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv970709	chr6:163342264-163409316	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv464126	chr6:163361196-163432364	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	nsv605186	chr6:163361196-163432364	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
18	nsv1021433	chr6:163375760-163509866	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163393000-163395200	Weak transcription	Fetal Kidney	kidney
2	chr6:163393200-163396000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:163393600-163394600	Enhancers	Fetal Muscle Leg	muscle
4	chr6:163394000-163395000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:163394000-163395000	Enhancers	Brain Substantia Nigra	brain
6	chr6:163394200-163394400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr6:163394200-163394400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
8	chr6:163394200-163394400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
9	chr6:163394200-163394600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:163394200-163394600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:163394200-163394600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:163394200-163394600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr6:163394200-163394600	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr6:163394200-163394600	Enhancers	Psoas Muscle	Psoas
15	chr6:163394200-163394800	Enhancers	Brain Hippocampus Middle	brain
16	chr6:163394200-163396200	Enhancers	NHDF-Ad	bronchial

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