Variant report

Variant	rs62432087
Chromosome Location	chr6:140161215-140161216
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:139694314..139696643-chr6:140160154..140162718,2	K562	blood:

Variant related genes	Relation type
ENSG00000164442	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12111348	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62432085	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62432086	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62432089	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62432092	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73557442	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753070	0.81[ASN][1000 genomes]
rs9321755	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9373252	0.94[ASN][1000 genomes]
rs9376471	0.95[ASN][1000 genomes]
rs9376472	0.95[ASN][1000 genomes]
rs9376473	0.88[ASN][1000 genomes]
rs9484317	0.98[ASN][1000 genomes]
rs9495586	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1022881	chr6:140098646-140172570	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140151000-140161400	Weak transcription	Left Ventricle	heart
2	chr6:140160200-140161400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr6:140160200-140161800	Enhancers	Placenta	Placenta
4	chr6:140160200-140163600	Enhancers	Primary B cells from peripheral blood	blood
5	chr6:140160400-140164000	Enhancers	Primary B cells from cord blood	blood
6	chr6:140160600-140161400	Flanking Active TSS	Liver	Liver
7	chr6:140160800-140161400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:140160800-140161400	Active TSS	Brain Substantia Nigra	brain
9	chr6:140160800-140161600	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
10	chr6:140160800-140161800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr6:140161000-140161400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:140161000-140161400	Enhancers	Primary hematopoietic stem cells	blood
13	chr6:140161000-140161400	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:140161200-140161400	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr6:140161200-140161400	Enhancers	Adipose Nuclei	Adipose
16	chr6:140161200-140161400	Enhancers	NHDF-Ad	bronchial
17	chr6:140161200-140162400	Weak transcription	Duodenum Mucosa	Duodenum
18	chr6:140161200-140162400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr6:140161200-140162400	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr6:140161200-140167800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr6:140161200-140167800	Weak transcription	Psoas Muscle	Psoas

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