Variant report

Variant	rs9373252
Chromosome Location	chr6:140183615-140183616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12111348	0.94[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3015436	0.93[CHB][hapmap]
rs62432085	0.94[ASN][1000 genomes]
rs62432086	0.94[ASN][1000 genomes]
rs62432087	0.94[ASN][1000 genomes]
rs62432089	0.94[ASN][1000 genomes]
rs62432092	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs73557442	0.94[ASN][1000 genomes]
rs7753070	0.86[ASN][1000 genomes]
rs9321755	0.94[ASN][1000 genomes]
rs9376471	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.92[TSI][hapmap];0.98[ASN][1000 genomes]
rs9376472	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9376473	0.90[ASN][1000 genomes]
rs9385884	0.85[ASN][1000 genomes]
rs9484317	0.92[ASN][1000 genomes]
rs9495586	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9373252	MYO3B	trans	parietal	SCAN
rs9373252	PDE7B	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140174600-140187000	Weak transcription	Psoas Muscle	Psoas
2	chr6:140178600-140184000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:140179800-140185200	Weak transcription	Fetal Intestine Small	intestine
4	chr6:140182200-140184400	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:140183400-140186000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:140183600-140185400	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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