Variant report

Variant	rs7753070
Chromosome Location	chr6:140185426-140185427
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12111348	0.86[ASN][1000 genomes]
rs3015436	0.88[CHB][hapmap]
rs62432085	0.81[ASN][1000 genomes]
rs62432086	0.81[ASN][1000 genomes]
rs62432087	0.81[ASN][1000 genomes]
rs62432089	0.81[ASN][1000 genomes]
rs62432092	0.84[ASN][1000 genomes]
rs73557442	0.81[ASN][1000 genomes]
rs9321755	0.81[ASN][1000 genomes]
rs9373252	0.86[ASN][1000 genomes]
rs9376471	0.94[CHB][hapmap];0.85[ASN][1000 genomes]
rs9376472	0.85[ASN][1000 genomes]
rs9385884	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9484317	0.81[ASN][1000 genomes]
rs9495586	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140174600-140187000	Weak transcription	Psoas Muscle	Psoas
2	chr6:140183400-140186000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:140184200-140186400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:140184800-140189400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:140185200-140185800	Enhancers	Fetal Intestine Small	intestine
6	chr6:140185400-140193800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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