Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150646137..150648585-chr6:150648675..150650937,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000201628	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12055507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538483	0.80[ASN][1000 genomes]
rs1538484	0.90[ASN][1000 genomes]
rs1890519	0.92[ASN][1000 genomes]
rs1890520	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2344747	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61650392	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs623829	0.82[ASN][1000 genomes]
rs623882	0.80[ASN][1000 genomes]
rs62434564	0.83[EUR][1000 genomes]
rs6901397	0.92[ASN][1000 genomes]
rs6915103	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6940067	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6940396	0.87[ASN][1000 genomes]
rs868247	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs884678	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs884679	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs9371954	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9371955	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9383792	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9383793	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9384412	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9384417	0.81[EUR][1000 genomes]
rs9397882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv5538	chr6:150640370-150652751	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150645600-150663000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:150649000-150656600	Weak transcription	Right Atrium	heart
3	chr6:150649600-150653800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:150650200-150653800	Weak transcription	K562	blood
5	chr6:150650400-150651000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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