Variant report

Variant	rs62481525
Chromosome Location	chr7:124286927-124286928
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs56781370	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57005410	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62478268	0.82[ASN][1000 genomes]
rs62478269	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62478327	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62478339	0.80[ASN][1000 genomes]
rs62481523	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6975677	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73441561	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv831118	chr7:124172267-124347527	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124271400-124287600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:124283400-124287200	Weak transcription	Brain Angular Gyrus	brain
3	chr7:124284600-124287600	Weak transcription	Fetal Lung	lung
4	chr7:124284800-124289000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:124285200-124289400	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr7:124286200-124289400	Weak transcription	Brain Hippocampus Middle	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links