Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:124302728..124305170-chr7:124305971..124308456,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs4404861	0.86[EUR][1000 genomes]
rs4728004	0.86[EUR][1000 genomes]
rs4731195	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4731196	0.88[EUR][1000 genomes]
rs55654546	0.86[EUR][1000 genomes]
rs55765047	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs57005410	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60034049	0.86[EUR][1000 genomes]
rs61380107	0.88[EUR][1000 genomes]
rs62478267	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62478268	1.00[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs62478327	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62478339	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62481523	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62481525	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6466942	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6966034	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73221445	0.84[EUR][1000 genomes]
rs73441561	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7804776	0.88[EUR][1000 genomes]
rs9641743	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv831118	chr7:124172267-124347527	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv275213	chr7:124300969-124311742	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124302000-124307600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr7:124303000-124307600	Weak transcription	Brain Hippocampus Middle	brain
3	chr7:124304200-124307600	Weak transcription	Brain Substantia Nigra	brain
4	chr7:124306800-124307600	Enhancers	Fetal Lung	lung
5	chr7:124307000-124308200	Enhancers	Brain Anterior Caudate	brain
6	chr7:124307200-124308200	Enhancers	Placenta	Placenta
7	chr7:124307400-124307600	Enhancers	Pancreatic Islets	Pancreatic Islet
8	chr7:124307400-124307800	Flanking Active TSS	Liver	Liver
9	chr7:124307400-124309000	Enhancers	Brain Angular Gyrus	brain

Quick Search: