Variant report

Variant	rs61380107
Chromosome Location	chr7:124307902-124307903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:124302728..124305170-chr7:124305971..124308456,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs4404861	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4728004	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4731195	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4731196	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55654546	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55765047	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56781370	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59386025	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60017067	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60034049	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62478267	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62478269	0.88[EUR][1000 genomes]
rs62478327	0.85[EUR][1000 genomes]
rs62478334	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62478335	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62478337	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62478338	0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6466942	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6966034	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73221445	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7804776	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9641743	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv831118	chr7:124172267-124347527	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv275213	chr7:124300969-124311742	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124307000-124308200	Enhancers	Brain Anterior Caudate	brain
2	chr7:124307200-124308200	Enhancers	Placenta	Placenta
3	chr7:124307400-124309000	Enhancers	Brain Angular Gyrus	brain
4	chr7:124307600-124308000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:124307600-124308000	Enhancers	Brain Cingulate Gyrus	brain
6	chr7:124307600-124308000	Active TSS	Brain Substantia Nigra	brain
7	chr7:124307600-124308000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
8	chr7:124307600-124308000	Enhancers	NHLF	lung
9	chr7:124307600-124308200	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr7:124307600-124308400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr7:124307800-124308000	Active TSS	Fetal Lung	lung
12	chr7:124307800-124308200	Enhancers	Aorta	Aorta
13	chr7:124307800-124308200	Enhancers	Liver	Liver
14	chr7:124307800-124308200	Flanking Active TSS	Brain Hippocampus Middle	brain
15	chr7:124307800-124309000	Enhancers	Placenta Amnion	Placenta Amnion

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