Variant report

Variant	rs4404861
Chromosome Location	chr7:124303573-124303574
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:124302842..124303610-chr7:124405672..124406206,2	MCF-7	breast:
2	chr7:124302728..124305170-chr7:124305971..124308456,2	K562	blood:

Variant related genes	Relation type
ENSG00000170775	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs4728004	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4731195	0.90[AFR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4731196	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55654546	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55765047	0.81[AFR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56781370	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59386025	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60017067	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60034049	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61380107	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62478267	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62478269	0.86[EUR][1000 genomes]
rs62478327	0.83[EUR][1000 genomes]
rs62478334	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62478335	0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62478337	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62478338	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6466942	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6966034	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73221445	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7804776	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9641743	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv831118	chr7:124172267-124347527	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv275213	chr7:124300969-124311742	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124301000-124303800	Weak transcription	Brain Substantia Nigra	brain
2	chr7:124302000-124307600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:124302600-124307400	Weak transcription	Brain Angular Gyrus	brain
4	chr7:124302800-124307400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:124303000-124307600	Weak transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links