Variant report
| Variant | rs4731196 |
|---|---|
| Chromosome Location | chr7:124314593-124314594 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs4404861 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4728004 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4731195 | 0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs55654546 | 0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs55765047 | 0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs56781370 | 0.87[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs59386025 | 0.90[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs60017067 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs60034049 | 0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs61380107 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs62478267 | 0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs62478269 | 0.88[EUR][1000 genomes] |
| rs62478327 | 0.85[EUR][1000 genomes] |
| rs62478334 | 0.82[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs62478335 | 0.82[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs62478337 | 0.83[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs62478338 | 0.83[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs6466942 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6966034 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73221445 | 0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7804776 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9641743 | 1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv429809 | chr7:123937674-124835925 | Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 49 gene(s) | inside rSNPs | diseases |
| 2 | nsv831118 | chr7:124172267-124347527 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1027091 | chr7:124311742-124388908 | Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs4731196 | C7orf68 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:124313800-124315000 | Weak transcription | Fetal Lung | lung |
