Variant report

Variant	rs6975677
Chromosome Location	chr7:124237668-124237669
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10500093	0.84[CHB][hapmap]
rs12533590	0.81[ASN][1000 genomes]
rs2402741	0.83[ASN][1000 genomes]
rs4404861	0.80[CEU][hapmap];0.84[JPT][hapmap]
rs57005410	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62481518	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62481523	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62481525	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6953912	0.83[ASN][1000 genomes]
rs73441561	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429809	chr7:123937674-124835925	Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
2	nsv831118	chr7:124172267-124347527	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1031885	chr7:124236838-124268655	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124237000-124237800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:124237000-124238000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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