Variant report

Variant	rs62514294
Chromosome Location	chr8:59223240-59223241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs62512263	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62512270	0.83[EUR][1000 genomes]
rs62512297	0.90[EUR][1000 genomes]
rs62512302	0.85[EUR][1000 genomes]
rs62512304	0.97[EUR][1000 genomes]
rs62512307	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62512308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62512352	0.97[EUR][1000 genomes]
rs62514322	0.93[EUR][1000 genomes]
rs62514323	0.93[EUR][1000 genomes]
rs62514332	0.91[EUR][1000 genomes]
rs6471694	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761427	chr8:59204373-59242564	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59220200-59226000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr8:59221600-59224200	Enhancers	Primary B cells from peripheral blood	blood
3	chr8:59222200-59223400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:59222600-59223400	Flanking Active TSS	GM12878-XiMat	blood
5	chr8:59222600-59223400	Enhancers	HSMM	muscle
6	chr8:59223000-59227400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links