Variant report

Variant	rs625500
Chromosome Location	chr9:101123914-101123915
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs497371	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs514993	1.00[JPT][hapmap]
rs518655	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs553139	1.00[JPT][hapmap]
rs583115	1.00[JPT][hapmap]
rs583641	1.00[JPT][hapmap]
rs628997	0.81[CEU][hapmap]
rs644842	1.00[JPT][hapmap]
rs659768	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs660148	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs669095	0.82[CEU][hapmap]
rs7039867	0.83[EUR][1000 genomes]
rs774334	0.82[CEU][hapmap]
rs774335	0.82[CEU][hapmap]
rs774342	1.00[JPT][hapmap]
rs774344	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101118800-101127400	Weak transcription	Brain Germinal Matrix	brain
2	chr9:101118800-101127400	Weak transcription	Fetal Brain Female	brain
3	chr9:101120600-101134400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:101121200-101124800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:101121200-101126600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:101123200-101124000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:101123200-101127400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr9:101123800-101124000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:101123800-101124200	Enhancers	Fetal Kidney	kidney
10	chr9:101123800-101125000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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