Variant report

Variant	rs774335
Chromosome Location	chr9:101123545-101123546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101122486..101124143-chr9:101132735..101134592,2	MCF-7	breast:
2	chr9:101120865..101122510-chr9:101122865..101125305,2	MCF-7	breast:
3	chr9:101123517..101127053-chr9:101127836..101130611,3	MCF-7	breast:
4	chr9:101114217..101117543-chr9:101123241..101126386,3	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10818824	0.84[ASN][1000 genomes]
rs10818825	0.84[ASN][1000 genomes]
rs10986017	0.86[JPT][hapmap]
rs2572364	0.83[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3780428	0.85[JPT][hapmap]
rs3780429	0.82[JPT][hapmap]
rs3780430	0.86[JPT][hapmap]
rs3780432	0.86[JPT][hapmap]
rs473589	0.86[ASN][1000 genomes]
rs487422	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs497371	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs531529	0.81[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs545115	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs552989	0.85[JPT][hapmap]
rs567931	0.85[JPT][hapmap]
rs583237	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs585819	0.85[JPT][hapmap]
rs613308	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs625500	0.82[CEU][hapmap]
rs628997	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs648085	0.85[JPT][hapmap]
rs659768	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs660148	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs661105	0.85[JPT][hapmap]
rs661532	0.85[JPT][hapmap]
rs669095	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs670807	0.92[CHB][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes]
rs693135	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7039867	0.95[ASN][1000 genomes]
rs774334	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs774344	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101118800-101127400	Weak transcription	Brain Germinal Matrix	brain
2	chr9:101118800-101127400	Weak transcription	Fetal Brain Female	brain
3	chr9:101120600-101134400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:101121200-101124800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:101121200-101126600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:101123200-101123800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:101123200-101124000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:101123200-101127400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:101123400-101123600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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