Variant report

Variant	rs10818825
Chromosome Location	chr9:101129460-101129461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10818821	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10818824	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2572364	0.84[ASN][1000 genomes]
rs3780428	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3780429	0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs3780430	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs487422	0.83[ASN][1000 genomes]
rs545115	0.84[ASN][1000 genomes]
rs583237	0.84[ASN][1000 genomes]
rs613308	0.84[ASN][1000 genomes]
rs628997	0.84[ASN][1000 genomes]
rs669095	0.82[ASN][1000 genomes]
rs670807	0.81[ASN][1000 genomes]
rs693135	0.84[ASN][1000 genomes]
rs7023272	0.83[ASN][1000 genomes]
rs7039867	0.82[ASN][1000 genomes]
rs774334	0.84[ASN][1000 genomes]
rs774335	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101120600-101134400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:101126600-101142600	Weak transcription	Brain Angular Gyrus	brain
3	chr9:101127800-101134200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:101128200-101164200	Weak transcription	Brain Germinal Matrix	brain
5	chr9:101128600-101130800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:101129000-101156000	Weak transcription	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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