Variant report

Variant	rs10818821
Chromosome Location	chr9:101128159-101128160
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10818824	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10818825	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10818832	0.81[ASN][1000 genomes]
rs10818833	0.81[ASN][1000 genomes]
rs10986017	0.84[ASN][1000 genomes]
rs10986060	0.81[ASN][1000 genomes]
rs12340940	0.81[ASN][1000 genomes]
rs3780428	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3780429	0.97[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs3780430	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3780432	0.84[ASN][1000 genomes]
rs473589	0.89[ASN][1000 genomes]
rs531529	0.88[ASN][1000 genomes]
rs659768	0.89[ASN][1000 genomes]
rs660148	0.89[ASN][1000 genomes]
rs7023272	0.99[ASN][1000 genomes]
rs7040639	0.84[ASN][1000 genomes]
rs7041466	0.84[ASN][1000 genomes]
rs774344	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101120600-101134400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:101126600-101142600	Weak transcription	Brain Angular Gyrus	brain
3	chr9:101126800-101128200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:101127000-101128800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr9:101127400-101128600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:101127800-101134200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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