Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:101080875..101082425-chr9:101121211..101123525,2	K562	blood:
2	chr9:101122486..101124143-chr9:101132735..101134592,2	MCF-7	breast:
3	chr9:101120865..101122510-chr9:101122865..101125305,2	MCF-7	breast:
4	chr9:101120819..101123318-chr9:101124282..101126811,3	K562	blood:
5	chr9:101114217..101117543-chr9:101123241..101126386,3	K562	blood:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10818821	0.84[ASN][1000 genomes]
rs10818828	0.85[JPT][hapmap]
rs10818832	0.82[JPT][hapmap]
rs10818833	0.82[JPT][hapmap]
rs10985939	1.00[AMR][1000 genomes]
rs10985995	1.00[AMR][1000 genomes]
rs10985999	1.00[AMR][1000 genomes]
rs10986041	0.84[JPT][hapmap]
rs10986044	0.82[JPT][hapmap]
rs10986060	0.82[JPT][hapmap]
rs10986071	1.00[EUR][1000 genomes]
rs2572364	0.86[JPT][hapmap]
rs3780428	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3780429	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3780430	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs3780432	0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs531529	0.84[JPT][hapmap]
rs613308	0.84[JPT][hapmap]
rs628997	0.84[JPT][hapmap]
rs659768	0.84[JPT][hapmap]
rs660148	0.84[JPT][hapmap]
rs669095	0.86[JPT][hapmap]
rs7023272	0.85[ASN][1000 genomes]
rs7040639	1.00[ASN][1000 genomes]
rs7041466	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs774334	0.86[JPT][hapmap]
rs774335	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101118800-101127400	Weak transcription	Brain Germinal Matrix	brain
2	chr9:101118800-101127400	Weak transcription	Fetal Brain Female	brain
3	chr9:101120600-101134400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:101121200-101124800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:101121200-101126600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:101123200-101123800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr9:101123200-101124000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:101123200-101127400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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