Variant report

Variant	rs7040639
Chromosome Location	chr9:101121741-101121742
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10818821	0.84[ASN][1000 genomes]
rs10818828	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10986017	1.00[ASN][1000 genomes]
rs10986018	0.88[EUR][1000 genomes]
rs11515524	0.87[EUR][1000 genomes]
rs16915140	0.97[EUR][1000 genomes]
rs3780428	0.83[ASN][1000 genomes]
rs3780429	0.83[ASN][1000 genomes]
rs3780430	0.83[ASN][1000 genomes]
rs3780432	1.00[ASN][1000 genomes]
rs7023272	0.85[ASN][1000 genomes]
rs7041466	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101118000-101122600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
2	chr9:101118800-101127400	Weak transcription	Brain Germinal Matrix	brain
3	chr9:101118800-101127400	Weak transcription	Fetal Brain Female	brain
4	chr9:101120600-101134400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr9:101121000-101123200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:101121200-101122000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:101121200-101124800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:101121200-101126600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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