Variant report

Variant	rs3780428
Chromosome Location	chr9:101128916-101128917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101125220..101129376-chr9:101135603..101141784,6	K562	blood:
2	chr9:101127682..101131370-chr9:101135028..101139404,5	K562	blood:
3	chr9:101123517..101127053-chr9:101127836..101130611,3	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10818821	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10818824	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10818825	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10818828	0.82[JPT][hapmap]
rs10818832	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs10818833	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs10986017	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs10986041	0.82[JPT][hapmap]
rs10986060	0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs12340940	0.80[ASN][1000 genomes]
rs2572364	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs3780429	1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs3780430	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3780432	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs473589	0.88[ASN][1000 genomes]
rs487910	0.80[CHB][hapmap];0.83[CHD][hapmap]
rs531529	0.90[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.92[MEX][hapmap];0.89[ASN][1000 genomes]
rs567931	0.80[CHB][hapmap]
rs585325	0.80[CHB][hapmap]
rs585819	0.80[CHB][hapmap];0.83[CHD][hapmap]
rs613308	0.92[CHD][hapmap];0.85[JPT][hapmap]
rs628997	0.92[CHD][hapmap];0.85[JPT][hapmap]
rs648085	0.80[CHB][hapmap]
rs659768	0.80[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs660148	0.80[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs669095	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs670807	0.82[CHB][hapmap]
rs7023272	0.97[ASN][1000 genomes]
rs7040639	0.83[ASN][1000 genomes]
rs7041466	0.83[ASN][1000 genomes]
rs774334	0.85[JPT][hapmap]
rs774335	0.85[JPT][hapmap]
rs774344	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101120600-101134400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:101126600-101142600	Weak transcription	Brain Angular Gyrus	brain
3	chr9:101127800-101134200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:101128200-101164200	Weak transcription	Brain Germinal Matrix	brain
5	chr9:101128600-101130800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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