Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10818824	0.81[ASN][1000 genomes]
rs10818825	0.81[ASN][1000 genomes]
rs2572364	1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes]
rs3780428	0.82[CHB][hapmap]
rs3780429	0.82[CHB][hapmap]
rs3780430	0.83[CHB][hapmap]
rs473589	0.85[ASN][1000 genomes]
rs487422	0.97[ASN][1000 genomes]
rs487910	0.82[CHB][hapmap]
rs531529	0.91[CHB][hapmap];0.86[JPT][hapmap];0.86[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs545115	0.96[ASN][1000 genomes]
rs567931	0.82[CHB][hapmap]
rs583237	0.96[ASN][1000 genomes]
rs585325	0.82[CHB][hapmap]
rs585819	0.82[CHB][hapmap]
rs613308	0.92[CHB][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs628997	0.92[CHB][hapmap];0.86[JPT][hapmap];0.96[ASN][1000 genomes]
rs648085	0.82[CHB][hapmap]
rs659768	0.82[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs660148	0.82[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs669095	1.00[CHB][hapmap];0.88[JPT][hapmap];0.99[ASN][1000 genomes]
rs693135	0.96[ASN][1000 genomes]
rs7039867	0.94[ASN][1000 genomes]
rs774334	0.92[CHB][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes]
rs774335	0.92[CHB][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes]
rs774344	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101118000-101122600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
2	chr9:101118800-101121000	Enhancers	Osteobl	bone
3	chr9:101118800-101127400	Weak transcription	Brain Germinal Matrix	brain
4	chr9:101118800-101127400	Weak transcription	Fetal Brain Female	brain
5	chr9:101119200-101121200	Enhancers	Muscle Satellite Cultured Cells	--
6	chr9:101119400-101121200	Enhancers	HUVEC	blood vessel
7	chr9:101119600-101121200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr9:101119600-101121200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr9:101120000-101121000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:101120000-101121200	Enhancers	NHDF-Ad	bronchial
11	chr9:101120200-101120800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr9:101120200-101120800	Enhancers	NH-A	brain
13	chr9:101120200-101120800	Enhancers	NHLF	lung
14	chr9:101120200-101121000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:101120200-101121000	Enhancers	Gastric	stomach
16	chr9:101120200-101121200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr9:101120400-101120800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:101120400-101121000	Enhancers	Pancreas	Pancrea
19	chr9:101120400-101121200	Enhancers	Lung	lung
20	chr9:101120600-101134400	Weak transcription	Brain Inferior Temporal Lobe	brain

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