Variant report

Variant	rs583237
Chromosome Location	chr9:101126413-101126414
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10818824	0.84[ASN][1000 genomes]
rs10818825	0.84[ASN][1000 genomes]
rs2572364	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs473589	0.89[ASN][1000 genomes]
rs487422	0.99[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs497371	0.87[EUR][1000 genomes]
rs531529	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs545115	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs613308	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs628997	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs659768	0.89[ASN][1000 genomes]
rs660148	0.89[ASN][1000 genomes]
rs669095	0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs670807	0.96[ASN][1000 genomes]
rs693135	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039867	0.98[ASN][1000 genomes]
rs774334	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs774335	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs774344	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101118800-101127400	Weak transcription	Brain Germinal Matrix	brain
2	chr9:101118800-101127400	Weak transcription	Fetal Brain Female	brain
3	chr9:101120600-101134400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:101121200-101126600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:101123200-101127400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:101124000-101127000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:101125600-101126600	Enhancers	Fetal Kidney	kidney
8	chr9:101125800-101127200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:101126200-101126600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:101126200-101126600	Enhancers	Fetal Stomach	stomach
11	chr9:101126400-101126800	Enhancers	Colon Smooth Muscle	Colon

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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