Variant report

Variant	rs497371
Chromosome Location	chr9:101121947-101121948
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs2572364	0.88[EUR][1000 genomes]
rs487422	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs514993	1.00[JPT][hapmap]
rs518655	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs545115	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs553139	1.00[JPT][hapmap]
rs583115	1.00[JPT][hapmap]
rs583237	0.87[EUR][1000 genomes]
rs583641	1.00[JPT][hapmap]
rs613308	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs625500	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs628997	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs644842	1.00[JPT][hapmap]
rs669095	0.81[EUR][1000 genomes]
rs693135	0.87[EUR][1000 genomes]
rs774334	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs774335	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs774342	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101118000-101122600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
2	chr9:101118800-101127400	Weak transcription	Brain Germinal Matrix	brain
3	chr9:101118800-101127400	Weak transcription	Fetal Brain Female	brain
4	chr9:101120600-101134400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr9:101121000-101123200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:101121200-101122000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:101121200-101124800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr9:101121200-101126600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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