Variant report

Variant	rs2572364
Chromosome Location	chr9:101126504-101126505
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101125471..101128354-chr9:101130836..101133824,3	MCF-7	breast:
2	chr9:101125471..101127480-chr9:101134828..101138522,3	K562	blood:
3	chr9:101118065..101120527-chr9:101125284..101127411,2	K562	blood:
4	chr9:101116043..101117786-chr9:101124886..101127465,2	K562	blood:
5	chr9:101123517..101127053-chr9:101127836..101130611,3	MCF-7	breast:
6	chr9:101125220..101129376-chr9:101135603..101141784,6	K562	blood:
7	chr9:101120819..101123318-chr9:101124282..101126811,3	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10818824	0.84[ASN][1000 genomes]
rs10818825	0.84[ASN][1000 genomes]
rs10986017	0.86[JPT][hapmap]
rs3780428	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs3780429	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs3780430	0.83[CHB][hapmap];0.86[JPT][hapmap]
rs3780432	0.86[JPT][hapmap]
rs473589	0.89[ASN][1000 genomes]
rs487422	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs487910	0.82[CHB][hapmap]
rs497371	0.88[EUR][1000 genomes]
rs531529	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs545115	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs552989	0.85[JPT][hapmap]
rs567931	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs583237	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs585325	0.82[CHB][hapmap]
rs585819	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs613308	0.92[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs628997	0.82[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs648085	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs659768	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs660148	0.82[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs661105	0.85[JPT][hapmap]
rs661532	0.85[JPT][hapmap]
rs669095	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs670807	1.00[CHB][hapmap];0.88[JPT][hapmap];0.96[ASN][1000 genomes]
rs693135	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039867	0.98[ASN][1000 genomes]
rs774334	0.83[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs774335	0.83[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs774344	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101118800-101127400	Weak transcription	Brain Germinal Matrix	brain
2	chr9:101118800-101127400	Weak transcription	Fetal Brain Female	brain
3	chr9:101120600-101134400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:101121200-101126600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr9:101123200-101127400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:101124000-101127000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:101125600-101126600	Enhancers	Fetal Kidney	kidney
8	chr9:101125800-101127200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr9:101126200-101126600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:101126200-101126600	Enhancers	Fetal Stomach	stomach
11	chr9:101126400-101126800	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links