Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:101121184..101122748-chr9:101132251..101134952,2	K562	blood:
2	chr9:101122486..101124143-chr9:101132735..101134592,2	MCF-7	breast:
3	chr9:101132158..101134151-chr9:101134451..101136659,2	MCF-7	breast:
4	chr9:101131416..101134090-chr9:101135125..101136966,2	MCF-7	breast:
5	chr9:101131978..101133928-chr9:101135656..101138427,3	K562	blood:
6	chr9:101130044..101133928-chr9:101135656..101137826,5	K562	blood:
7	chr9:101125471..101128354-chr9:101130836..101133824,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10818828	0.82[JPT][hapmap]
rs10818832	1.00[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs10818833	1.00[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs10986041	0.82[JPT][hapmap]
rs10986060	1.00[CHD][hapmap];0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs12340940	0.86[ASN][1000 genomes]
rs2572364	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs3780428	0.80[CHB][hapmap]
rs3780429	0.80[CHB][hapmap]
rs3780430	0.80[CHB][hapmap]
rs473589	0.83[ASN][1000 genomes]
rs487910	1.00[CHB][hapmap];0.96[CHD][hapmap];0.84[JPT][hapmap];0.90[ASN][1000 genomes]
rs531529	0.90[CHB][hapmap];0.80[CHD][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs552989	0.88[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs585325	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs585819	1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs613308	0.85[JPT][hapmap]
rs628997	0.85[JPT][hapmap]
rs648085	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs659768	0.80[CHB][hapmap];0.80[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs660148	0.80[CHB][hapmap];0.80[CHD][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes]
rs661105	0.88[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs661532	0.88[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs669095	0.82[CHB][hapmap];0.85[JPT][hapmap]
rs670807	0.82[CHB][hapmap]
rs774334	0.85[JPT][hapmap]
rs774335	0.85[JPT][hapmap]
rs774344	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831664	chr9:101024862-101205637	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs567931	PRH2	trans	cerebellum	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101120600-101134400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr9:101126600-101142600	Weak transcription	Brain Angular Gyrus	brain
3	chr9:101127800-101134200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr9:101128200-101164200	Weak transcription	Brain Germinal Matrix	brain
5	chr9:101129000-101156000	Weak transcription	Fetal Brain Female	brain
6	chr9:101130400-101134800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr9:101130800-101135600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:101131200-101135600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:101131400-101135200	Weak transcription	Osteobl	bone
10	chr9:101131400-101135400	Weak transcription	NH-A	brain
11	chr9:101132000-101134000	Weak transcription	K562	blood
12	chr9:101132600-101134600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr9:101132800-101142800	Weak transcription	Right Atrium	heart
14	chr9:101133200-101133600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:101133400-101138000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr9:101133400-101139400	Enhancers	Pancreas	Pancrea
17	chr9:101133400-101142400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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