Variant report

Variant	rs62558983
Chromosome Location	chr9:21195373-21195374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr9:21195081-21195477	H1-hESC	embryonic stem cell:	n/a	n/a
2	CTCF	chr9:21195174-21195491	Medullo	brain:	n/a	chr9:21195318-21195336
3	CTCF	chr9:21195240-21195390	HCPEpiC	choroid plexus:	n/a	chr9:21195318-21195336
4	CTCF	chr9:21195280-21195430	Caco-2	colon:	n/a	chr9:21195318-21195336
5	CTCF	chr9:21195148-21195378	A549	lung:	n/a	chr9:21195318-21195336
6	CTCF	chr9:21195260-21195410	HepG2	liver:	n/a	chr9:21195318-21195336
7	CTCF	chr9:21195213-21195422	Kidney_OC	kidney:	n/a	chr9:21195318-21195336
8	CTCF	chr9:21195200-21195459	Pancreas_OC	pancreas:	n/a	chr9:21195318-21195336
9	CTCF	chr9:21195260-21195410	HCPEpiC	choroid plexus:	n/a	chr9:21195318-21195336
10	SPI1	chr9:21195327-21195832	GM12891	blood:	n/a	chr9:21195664-21195671 chr9:21195658-21195665
11	RAD21	chr9:21195225-21195422	HepG2	liver:	n/a	n/a
12	CTCF	chr9:21195320-21195470	HCT-116	colon:	n/a	n/a
13	CTCF	chr9:21195340-21195490	HRPEpiC	eye:	n/a	n/a
14	CTCF	chr9:21195169-21195462	LNCaP	prostate:	n/a	chr9:21195318-21195336
15	CTCF	chr9:21195260-21195410	BJ	skin:	n/a	chr9:21195318-21195336
16	CTCF	chr9:21195260-21195410	AG04449	skin:	n/a	chr9:21195318-21195336
17	CTCF	chr9:21195300-21195450	GM12864	blood:	n/a	chr9:21195318-21195336
18	RAD21	chr9:21195189-21195457	GM12878	blood:	n/a	n/a
19	CTCF	chr9:21195168-21195473	GM12878	blood:	n/a	chr9:21195318-21195336
20	CTCF	chr9:21195051-21195657	A549	lung:	n/a	chr9:21195318-21195336
21	CTCF	chr9:21195240-21195390	AG10803	skin:	n/a	chr9:21195318-21195336
22	CTCF	chr9:21195166-21195452	GM10248	blood:	n/a	chr9:21195318-21195336
23	CTCF	chr9:21195168-21195484	LNCaP	prostate:	n/a	chr9:21195318-21195336
24	CTCF	chr9:21195320-21195470	MCF-7	breast:	n/a	n/a
25	CTCF	chr9:21195187-21195435	HepG2	liver:	n/a	chr9:21195318-21195336
26	RAD21	chr9:21194969-21195467	SK-N-SH	brain:	n/a	n/a
27	SMC3	chr9:21195183-21195456	Hela-S3	cervix:	n/a	n/a
28	CTCF	chr9:21195223-21195420	H1-hESC	embryonic stem cell:	n/a	chr9:21195318-21195336
29	CTCF	chr9:21195180-21195425	A549	lung:	n/a	chr9:21195318-21195336
30	CTCF	chr9:21195320-21195470	HMEC	breast:	n/a	n/a
31	CTCF	chr9:21195280-21195430	GM12872	blood:	n/a	chr9:21195318-21195336
32	CTCF	chr9:21195260-21195410	HCFaa	heart:	n/a	chr9:21195318-21195336
33	CTCF	chr9:21195280-21195430	Hela-S3	cervix:	n/a	chr9:21195318-21195336
34	RAD21	chr9:21195169-21195466	HCT-116	colon:	n/a	n/a
35	CTCF	chr9:21195207-21195448	Lung_OC	lung:	n/a	chr9:21195318-21195336
36	CTCF	chr9:21195191-21195399	NHEK	skin:	n/a	chr9:21195318-21195336
37	CTCF	chr9:21195280-21195430	SK-N-SH_RA	brain:	n/a	chr9:21195318-21195336
38	CTCF	chr9:21195240-21195390	Caco-2	colon:	n/a	chr9:21195318-21195336
39	CTCF	chr9:21195260-21195410	GM12865	blood:	n/a	chr9:21195318-21195336
40	CTCF	chr9:21195179-21195399	GM12892	blood:	n/a	chr9:21195318-21195336
41	SPI1	chr9:21195206-21195816	GM12891	blood:	n/a	chr9:21195664-21195671 chr9:21195658-21195665
42	CTCF	chr9:21195300-21195450	GM12869	blood:	n/a	chr9:21195318-21195336
43	CTCF	chr9:21195340-21195490	GM12871	blood:	n/a	n/a
44	CTCF	chr9:21195240-21195390	GM12870	blood:	n/a	chr9:21195318-21195336
45	CTCF	chr9:21195191-21195447	Hela-S3	cervix:	n/a	chr9:21195318-21195336
46	CTCF	chr9:21195159-21195661	Spleen_OC	spleen:	n/a	chr9:21195318-21195336
47	CTCF	chr9:21195186-21195427	ProgFib	skin:	n/a	chr9:21195318-21195336
48	RAD21	chr9:21195209-21195423	SK-N-SH_RA	brain:	n/a	n/a
49	CTCF	chr9:21195240-21195390	HPAF	blood vessel:	n/a	chr9:21195318-21195336
50	POU2F2	chr9:21195225-21195397	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
IFNWP9	TF binding region

Extended variants
information (count: 27 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817218	chr9:20687769-21309177	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv892724	chr9:20690244-21517302	Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
3	nsv466293	chr9:21029330-21199680	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv613752	chr9:21029330-21199680	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1032466	chr9:21052069-21243756	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
6	nsv540084	chr9:21052069-21243756	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
7	nsv892734	chr9:21108817-21323089	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
8	nsv892735	chr9:21157373-21242161	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island lncRNA	12 gene(s)	inside rSNPs	diseases
9	nsv968599	chr9:21166047-21239960	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region CpG island lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv613755	chr9:21170364-21216028	Weak transcription Flanking Active TSS Enhancers Active TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv1016978	chr9:21171267-21214877	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv1022579	chr9:21178517-21228248	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
13	esv2757324	chr9:21181454-21196515	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
14	esv2759678	chr9:21181454-21196515	Active TSS Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
15	nsv1018561	chr9:21181454-21228248	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island lncRNA	8 gene(s)	inside rSNPs	diseases
16	esv1795305	chr9:21183675-21205399	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
17	nsv1033177	chr9:21184475-21206426	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
18	esv3439842	chr9:21186801-21227493	Active TSS Weak transcription Enhancers Flanking Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv613756	chr9:21187700-21227391	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv438096	chr9:21190827-21199680	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region lncRNA	2 gene(s)	inside rSNPs	diseases
21	nsv516132	chr9:21191463-21206427	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
22	nsv1021574	chr9:21191684-21228248	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island lncRNA	7 gene(s)	inside rSNPs	diseases
23	esv3342983	chr9:21192585-21211466	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	5 gene(s)	inside rSNPs	diseases
24	esv3393912	chr9:21192898-21211563	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
25	esv3450892	chr9:21194168-21212485	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
26	nsv8425	chr9:21195026-21206846	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
27	esv6326	chr9:21195284-21214004	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:21195200-21195600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr9:21195200-21195800	Active TSS	Hela-S3	cervix
3	chr9:21195200-21196000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr9:21195200-21196000	Enhancers	Monocytes-CD14+_RO01746	blood

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