Variant report

Variant	rs62560524
Chromosome Location	chr9:98017665-98017666
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10283758	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs10993503	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs12342782	0.81[AFR][1000 genomes]
rs12352586	0.81[AFR][1000 genomes]
rs1886992	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs28658564	0.81[AMR][1000 genomes]
rs4237226	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4647372	0.81[AFR][1000 genomes]
rs4647373	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4647401	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4647404	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4647421	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4647432	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4647441	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4744445	0.81[AFR][1000 genomes]
rs4744453	0.81[AFR][1000 genomes]
rs62560523	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:97973600-98024000	Weak transcription	Gastric	stomach
2	chr9:97991200-98024000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:97999800-98019000	Weak transcription	Aorta	Aorta
4	chr9:98007400-98024000	Weak transcription	Small Intestine	intestine
5	chr9:98009000-98018000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:98009000-98026600	Weak transcription	A549	lung
7	chr9:98009200-98027600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr9:98009400-98019400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr9:98009600-98023800	Weak transcription	Fetal Intestine Large	intestine
10	chr9:98013200-98025400	Weak transcription	Ovary	ovary
11	chr9:98013200-98027400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr9:98013400-98024600	Weak transcription	Right Ventricle	heart
13	chr9:98013400-98027600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:98015600-98027600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:98017600-98018000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr9:98017600-98030800	Weak transcription	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links