Variant report

Variant	rs4647401
Chromosome Location	chr9:98039178-98039179
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98034193..98037006-chr9:98038533..98040455,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10283758	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993475	0.80[EUR][1000 genomes]
rs10993479	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10993483	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10993503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10993520	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1105979	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12337959	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12338907	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12339700	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12341302	0.84[EUR][1000 genomes]
rs12342782	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12350646	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12352586	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12377946	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1886992	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1889241	0.80[EUR][1000 genomes]
rs28658564	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4237226	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4647372	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4647373	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4647404	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4647421	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4647432	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4647441	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743990	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4744444	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4744445	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4744453	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4744457	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4744458	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4744460	0.82[AMR][1000 genomes]
rs56134407	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62560523	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62560524	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7357617	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs879559	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98028400-98045400	Weak transcription	Gastric	stomach
2	chr9:98032000-98045400	Weak transcription	Pancreas	Pancrea
3	chr9:98038200-98039200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr9:98038400-98039400	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr9:98038600-98039200	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr9:98038600-98039600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr9:98038600-98039600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr9:98038600-98045400	Weak transcription	Psoas Muscle	Psoas
9	chr9:98038800-98039400	Flanking Active TSS	Primary T cells from cord blood	blood
10	chr9:98039000-98039200	Enhancers	Ovary	ovary

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