Variant report

Variant	rs28658564
Chromosome Location	chr9:98099048-98099049
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10283758	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10993479	0.81[AMR][1000 genomes]
rs10993483	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs10993503	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10993520	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1105979	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12337959	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12338907	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12339700	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12341302	0.96[EUR][1000 genomes]
rs12342782	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12350646	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12352586	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12377946	0.83[AMR][1000 genomes]
rs1886992	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4237226	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4647372	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4647373	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4647401	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4647404	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4647421	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4647432	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4647441	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4744445	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4744453	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4744456	0.84[EUR][1000 genomes]
rs4744457	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4744458	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4744460	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs56134407	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62560523	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62560524	0.81[AMR][1000 genomes]
rs7357617	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv3330996	chr9:98083446-98112507	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98098400-98099200	Enhancers	HepG2	liver
2	chr9:98099000-98102600	Weak transcription	Fetal Lung	lung

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