Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:98105856..98107591-chr9:98107862..98110752,2	MCF-7	breast:
2	chr9:98104888..98106927-chr9:98272777..98274676,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10283758	0.83[AMR][1000 genomes]
rs10993503	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10993520	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1105979	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12337959	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12339700	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12341302	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12342782	0.81[AMR][1000 genomes]
rs1886992	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs28658564	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4237226	0.83[AMR][1000 genomes]
rs4647372	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4647373	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4647401	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4647404	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4647421	0.84[AMR][1000 genomes]
rs4647432	0.83[AMR][1000 genomes]
rs4647441	0.83[AMR][1000 genomes]
rs4744453	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4744456	0.89[EUR][1000 genomes]
rs4744458	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4744460	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56134407	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62560523	0.84[AMR][1000 genomes]
rs7357617	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv3330996	chr9:98083446-98112507	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98105600-98107200	Enhancers	Dnd41	blood
2	chr9:98105600-98107600	Enhancers	Fetal Lung	lung
3	chr9:98105800-98107200	Enhancers	Fetal Thymus	thymus
4	chr9:98106000-98106800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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