Variant report

Variant	rs4744460
Chromosome Location	chr9:98132992-98132993
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10993503	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10993520	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1105979	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12337959	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12339700	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12341302	0.93[EUR][1000 genomes]
rs1886992	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28658564	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4647372	0.80[EUR][1000 genomes]
rs4647373	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4647401	0.82[AMR][1000 genomes]
rs4647404	0.82[AMR][1000 genomes]
rs4744453	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4744456	0.82[EUR][1000 genomes]
rs4744457	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4744458	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56134407	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7357617	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831657	chr9:97959274-98204769	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv531633	chr9:98078300-98431120	Flanking Active TSS Active TSS Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv1045479	chr9:98115290-98172995	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:98128000-98139200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr9:98131400-98134800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:98132000-98133200	Enhancers	HSMMtube	muscle
4	chr9:98132800-98134800	Weak transcription	Pancreas	Pancrea
5	chr9:98132800-98135400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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