Variant report

Variant	rs62565052
Chromosome Location	chr9:94396934-94396935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1492685	0.88[EUR][1000 genomes]
rs1532230	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1873747	0.91[EUR][1000 genomes]
rs62565053	0.84[EUR][1000 genomes]
rs7852614	0.91[EUR][1000 genomes]
rs7855529	0.91[EUR][1000 genomes]
rs9409447	0.88[EUR][1000 genomes]
rs9409448	0.90[EUR][1000 genomes]
rs9409634	0.88[EUR][1000 genomes]
rs9409635	0.88[EUR][1000 genomes]
rs9409636	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045332	chr9:94352661-94656016	Active TSS Bivalent Enhancer Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1047426	chr9:94363211-94758114	Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv531631	chr9:94373847-94633213	Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3584916	chr9:94394246-94403710	Enhancers	TF binding region miRNA	1 gene(s)	inside rSNPs	diseases
5	nsv614858	chr9:94395522-94403128	Enhancers	TF binding region miRNA	1 gene(s)	inside rSNPs	diseases
6	nsv614859	chr9:94395522-94403313	Enhancers	TF binding region miRNA	1 gene(s)	inside rSNPs	diseases
7	nsv614860	chr9:94396059-94399244	Enhancers	TF binding region miRNA	1 gene(s)	inside rSNPs	diseases
8	nsv438109	chr9:94396059-94400758	Enhancers	TF binding region miRNA	1 gene(s)	inside rSNPs	diseases
9	nsv614861	chr9:94396059-94403077	Enhancers	TF binding region miRNA	1 gene(s)	inside rSNPs	diseases
10	nsv614862	chr9:94396059-94403313	Enhancers	TF binding region miRNA	1 gene(s)	inside rSNPs	diseases
11	nsv516473	chr9:94396059-94405452	Enhancers ZNF genes & repeats Weak transcription	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
12	nsv818713	chr9:94396059-94406084	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
13	nsv614863	chr9:94396676-94398668	Enhancers	TF binding region miRNA	1 gene(s)	inside rSNPs	diseases
14	nsv614864	chr9:94396676-94403313	Enhancers	TF binding region miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:94395600-94397000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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